Bayesian hidden Markov tree models for clustering genes with shared evolutionary history
نویسندگان
چکیده
منابع مشابه
Clustering Sequences with Hidden Markov Models
This paper discusses a probabilistic model-based approach to clustering sequences, using hidden Markov models (HMMs) . The problem can be framed as a generalization of the standard mixture model approach to clustering in feature space. Two primary issues are addressed. First, a novel parameter initialization procedure is proposed, and second, the more difficult problem of determining the number...
متن کاملClustering hidden Markov models with variational HEM
The hidden Markov model (HMM) is a widely-used generative model that copes with sequential data, assuming that each observation is conditioned on the state of a hidden Markov chain. In this paper, we derive a novel algorithm to cluster HMMs based on the hierarchical EM (HEM) algorithm. The proposed algorithm i) clusters a given collection of HMMs into groups of HMMs that are similar, in terms o...
متن کاملIntrusion Detection Using Evolutionary Hidden Markov Model
Intrusion detection systems are responsible for diagnosing and detecting any unauthorized use of the system, exploitation or destruction, which is able to prevent cyber-attacks using the network package analysis. one of the major challenges in the use of these tools is lack of educational patterns of attacks on the part of the engine analysis; engine failure that caused the complete training, ...
متن کاملVariational Bayesian Analysis for Hidden Markov Models
The variational approach to Bayesian inference enables simultaneous estimation of model parameters and model complexity. An interesting feature of this approach is that it appears also to lead to an automatic choice of model complexity. Empirical results from the analysis of hidden Markov models with Gaussian observation densities illustrate this. If the variational algorithm is initialised wit...
متن کاملBayesian inference for Hidden Markov Models
Hidden Markov Models can be considered an extension of mixture models, allowing for dependent observations. In a hierarchical Bayesian framework, we show how Reversible Jump Markov Chain Monte Carlo techniques can be used to estimate the parameters of a model, as well as the number of regimes. We consider a mixture of normal distributions characterized by different means and variances under eac...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: The Annals of Applied Statistics
سال: 2019
ISSN: 1932-6157
DOI: 10.1214/18-aoas1208